squice API Documentation Modules Classes Names
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Class Hierarchy

  • abc.ABC
    • squice.BinaryFile.BinaryFile - Abstract class to various formats of binary data
      • squice.BinaryFile.NumpyBinary - Features binray data in the format: https://numpy.org/doc/1.13/neps/npy-format.html
    • squice.DataLoaders.DataLoader - Abstract class to load data from file and convert to a numpy matrix
      • squice.DataLoaders.ElectronDensityCcp4 - Class to load electron density in the ccp4 format
      • squice.DataLoaders.NumpyFile - Class to load a file of numerical data from numpy serislisation format
      • squice.DataLoaders.NumpyNow - Class to create a numpy matrix inline. The format of the uploaded data is (note the commas are the delim,sapce is for visuals) [[[1,2,3], [4, 5, 6]],
    • squice.MtxInterpolator.MtxInterpolator - Abstract class to define the methods for interpolation of a 3d numpy matrix. There are 3 methods of wrapping the data if it is out of bounds: cap : it is simply fixed at the bounds if it goes beyond periodic: it loops to make it a periodic shape eg 3...
      • squice.MtxInterpolator.Linear - This interpolator returns a linear interpolation of the point
      • squice.MtxInterpolator.Nearest - This interpolator returns the nearest value closest to the point
  • object
    • squice.GridMaker.GridMaker - Undocumented
    • squice.Matrix3d.Matrix3d - No class docstring; 0/4 instance variable, 1/8 method documented
    • squice.SpaceTransform.SpaceTransform - Undocumented
    • squice.VectorThree.VectorThree - Undocumented
  • squice.MtxDisplay.MtxDisplay - Class to display a numpy matrix in the simplest way as 3d data

API Documentation for squice, generated by pydoctor 24.3.3 at 2024-06-02 15:57:12.